User:Taejoon

From Marcotte Lab

Jump to: navigation, search

Academic experiences

Aug. 2007 ~ current - PhD in Cellular and Molecular Biology
Dr. Edward Marcotte lab, The Center for Systems and Synthetic Biology
Cellular and Molecular Biology program, Institute for Cellular and Molecular Biology
University of Texas at Austin, USA
Oct. 2005 ~ Sep. 2006 - M. Phil in Computational Biology
Cambridge Computational Biology Institute
Dept. of Applied Math. and Theoretical Physics, University of Cambridge/Clare Hall
Mar. 1998 ~ Feb. 2000 - Master of Science in Engineering
Dept. of Chemical Engineering, Seoul National University
Enzyme and Environmental Biotechnology Lab. (supervisor: Prof. Young Je Yoo)
Thesis: Analysis and prediction of enzyme thermostability using molecular modeling.
Mar. 1994 ~ Feb. 1998 - Bachelor of Science in Engineering
Dept. of Chemical Engineering, Seoul National University
Mar. 1992 ~ Feb. 1994 - Seoul Science High School

Professional experiences

Oct. 2006 ~ Jul. 2007 WT/CRUK Gurdon Institute, University of Cambridge, United Kingdom
Research assistant, Julie Ahringer Lab.
Microarray analysis for synMuv phenotype in C. elegans
Function of paralogous genes in C. elegans
Mar. 2006 ~ Sep.2006 WT/CRUK Gurdon Institute, University of Cambridge, United Kingdom
Internship student, Julie Ahringer Lab.
Microarray analysis for synMuv phenotype in C. elegans
Re-build genome-wide RNAi database
Jul. 2004 ~ Sep. 2005 Samsung Advanced Institute of Technology, Republic of Korea
Researcher, Bio Lab
In silico discovery for novel marker candidates to use in bacterial pathogen diagnostics.
Jan. 2001 ~ Jun. 2004 Samsung Advanced Institute of Technology, Republic of Korea
Researcher, Biochip Project Team
Development of probe design system for genotyping microarray: MODY3 chip(Mutation detection of TCF1 gene in human), Tuberculosis chip. (Mycobacterium identification and mutation detection for Rifampin resistance)
Development of analysis system for genotyping microarray.
Development of automatic analysis system for high-throughput SNP discovery: Allelotyping for pooled DNA samples using Sequenom's equipment.

Papers

  1. Kwon T*, Choi H*, Vogel C, Nesvizhskii AI, Marcotte EM, MSblender: a probabilistic approach for integrating peptide identifications from multiple database search engines, Journal of Proteome Research, in press: (2011) PubMed Link PDF
  2. Huse HK*, Kwon T*, Zlosnik JEA, Speert DP, Marcotte EM, Whiteley M, Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo, mBIO, 1(4):e00199-10 (2010) PubMed Link PDF ScienceNews Faculty of 1000 (FFa 8)
  3. Laurent J*, Vogel C*, Kwon T, Craig SA, Boutz DR, Huse HK, Nozue K, Walia H, Whiteley M, Ronald PC, Marcotte EM, Protein abundances are more conserved than mRNA abundances across diverse taxa, Proteomics, 10(23):4209-12. (2010) PubMed Link
  4. Ramakrishnan SR, Vogel C, Kwon T, Penalva LO, Marcotte EM, Miranker DP, Mining gene functional networks to improve mass-spectrometry based protein identification, Bioinformatics, Advanced access: (2009) PubMed Link

Talks

  • ASM Texas Branch Meeting 2010 (Texas State University, San Marcos, TX, USA, Fall 2010)
    • Title: Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo
    • Authors: Holly K. Huse*, Taejoon Kwon*
    • Holly presented, and won 'best presentation' prize!
  • International Worm Meeting (Los Angeles, USA, 2007)
    • Authors: Shane J. Woods, David M. Rivers, Taejoon Kwon, Anthony Rogers, Julie Ahringer,
    • Title: Examining functional genetic redundancy of duplicate genes between C. elegans and C. briggsae reveals evolutionary stability and an adaptive role of overlapping redundant function Abstract(number #186)
    • Shane presented.
  • Korean Institute of Chemical Engineering Conference (Ansan, Korea, 2000)
    • Authors: Taejoon Kwon, Young Je Yoo
    • Title: 'Structure analysis of thermostable enzymes, Korean Institute of Chemical Engineering Conference'

Poster

  • ASM General Meeting 2010 (San Diego, USA; May 2010) PDF
    • Title: Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo
    • Authors: Taejoon Kwon, Holly K. Huse, James E. A. Zlosnik+, David P. Speert+, Edward M. Marcotte, Marvin Whiteley (University of Texas at Austin, +University of British Columbia, Vancouver, Canada)
  • Systems Biology of Microorganism (Paris, France; March 2010) PDF
    • Title: Comparison(Inconsistency) of transcriptome and proteome: the case of P. aeruginosa PAO1 and PA14
    • Authors: Taejoon Kwon, Holly K. Huse, Edward M. Marcotte and Marvin Whiteley (University of Texas at Austin)
  • Pseudomonas 2009 International Conference (Hannover, Germany; August 2009) PDF
    • Title: Evolution of Pseudomonas aeruginosa during chronic lung infection
    • Authors: Holly K. Huse, Taejoon Kwon, James Zlosnik+, David Speert+, and Marvin Whiteley (University of Texas at Austin, +University of British Columbia, Vancouver, Canada)
    • Holly presented.
  • ISMB/ECCB 2004 (Glasgow, UK; 2004)
    • Title: GenSpector-LSDB: Locus-Specific Database for a Genotyping Microarray
    • Author: Taejoon Kwon
  • 2nd International Conferences on Protein Stabilisation (Lisbon, Portugal; 2000)
    • Title: Analysis of enzyme thermostability compared with the structure of hyperthermophilic proteins
    • Authors: Taejoon Kwon, Yoo Sung Choi, Seung Phil Pack, Young Je Yoo, Abstract
    • You-Sung and Seung-Phil presented.
  • ACS National Meeting (San Francisco, USA; 2000)
    • Title: Analysis of enzyme thermostability
    • Authors: Taejoon Kwon, Young Je Yoo,

Patents

  • JI-YOUNG OH, KYU-SANG LEE, TAEJOON KWON, Method of designing probe set, probe set designed by the method, microarray comprising the probe set, computer readable medium recorded thereon program to execute the method, and method of identifying target sequence using the probe set (US 2006/0204995; KR 10-2005-0019065; KR 10-2006-0019499)
  • KWON TAEJOON, LEE KYU-SANG, OH JI-YOUNG, Method of designing primer and probe sets, primer and probe set designed by the method, kit comprising the sets, computer readable medium recorded thereon program to execute the method, and method of identifying target sequence using the sets (US 2006/0204996; KR 10-2005-0019064)
  • KWON TAEJOON, Method of designing probe sets, microarray having substrate on which probe designed by the method is immobilized, and computer readable medium on which program for executing the method is recorded (US 2006/0058967; KR 10-2004-0073366)
  • KWON TAEJOON, Microarray having microarray identification information stored in the form of a spot, method of producing the microarray and method of using the microarray (US 2005/0227271; KR 10-2004-0024738)
  • CHOI SEUNG-HAK, NAM YUNSUN, KWON TAEJOON, CHUNG TAE SU, LEE KWONMOO, LEE HOSEUNG, Server-client network system for genotyping analysis and computer readable medium therefore (US 2004/0158408; KR 2003-5199)
  • KWON TAEJOON, Medical data providing system and medical data providing method (US 2005/0076158; KR 2003-68612)
  • KWON TAEJOON, System and method for designing probes using heterogeneous genetic information, and computer readable medium (US 2004/0157254; KR 2003-7122)
  • KWON TAEJOON, Storage medium, method for designing genotyping-microarray and computer system containing the same (US 2003/009203; KR 2001-71102)
Retrieved from "http://polaris.icmb.utexas.edu/index.php/User:Taejoon"
Classes