hvg_m1_pcc-1


Parameters

Minimum occurrence: 1
Pearson correlation coefficient cutoff -1
SUPERFAMILY version sf169
TOTAL 1539 superfamilies class [abcdefg] analysed

Results

1219 --- superfamilies class [abcdefg] in all 38 organisms

Correlation with number of different cell types


Genomes (SUPERFAMILY id):
cy ot ad dt tb em ra tl en nu pl ns an po xr kl al yl eu fc um cw cn aj ah de it df t1 tq xk gh di bw ro mh xq ht
Estimated number of celltypes (avg):
12.5 27.25 27.25 4.65 7.85 7.85 7.85 7.85 4.65 7.85 7.85 5.55 5.55 4.35 3.05 3.05 3.05 3.05 3.35 4.35 4.35 28.5 28.5 64 64 64 74 119.5 119.5 119.5 129.5 154 159 159 159 159 169 169

Function Category: total -- PCC>=-1

TOTAL: 1219 -- 1219

Other 120 -- 120
N_A 2 -- 2
Information 175 -- 175
General 87 -- 87
Regulation 163 -- 163
Processes_EC 55 -- 55
Processes_IC 169 -- 169
Metabolism 448 -- 448
Superfamilies with PCC>=-1 correlation with number of cell types
Clustering parameters: cluster -f hvg_m1_pcc-1.dup.pnorm.xclstr -g 1 -e 0 -p 1

Overview


Cluster --- NODE1218X --- 1219 ---

All superfamilies (most abundant subset)

All hvg_m1_pcc-1 dup clustered
Data

Clusters

Cluster -- NODE1218X -- with 1219 members


hvg_m1_pcc-1.hier.dup.NODE1218X
hvg_m1_pcc-1.hier.dup.NODE1218X.png
Data

hvg_m1_pcc-1.hier.dup.NODE1218X.fcn.png
Small categories
GO proc_m.sfmap
GO loc_m.sfmap
GO fcn_m.sfmap
Data for NODE1218X
1 superfamilies with more than 25 occurrences in at least one genome.